1c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath//=====================================================
2c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath// File   :  action_hessenberg.hh
3c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
4c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath//=====================================================
5c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath//
6c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath// This program is free software; you can redistribute it and/or
7c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath// modify it under the terms of the GNU General Public License
8c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath// as published by the Free Software Foundation; either version 2
9c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath// of the License, or (at your option) any later version.
10c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath//
11c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath// This program is distributed in the hope that it will be useful,
12c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath// but WITHOUT ANY WARRANTY; without even the implied warranty of
13c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
14c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath// GNU General Public License for more details.
15c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath// You should have received a copy of the GNU General Public License
16c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath// along with this program; if not, write to the Free Software
17c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
18c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath//
19c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath#ifndef ACTION_HESSENBERG
20c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath#define ACTION_HESSENBERG
21c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath#include "utilities.h"
22c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath#include "STL_interface.hh"
23c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath#include <string>
24c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath#include "init/init_function.hh"
25c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath#include "init/init_vector.hh"
26c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath#include "init/init_matrix.hh"
27c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
28c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamathusing namespace std;
29c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
30c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamathtemplate<class Interface>
31c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamathclass Action_hessenberg {
32c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
33c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamathpublic :
34c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
35c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  // Ctor
36c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
37c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  Action_hessenberg( int size ):_size(size)
38c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  {
39c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    MESSAGE("Action_hessenberg Ctor");
40c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
41c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    // STL vector initialization
42c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    init_matrix<pseudo_random>(X_stl,_size);
43c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
44c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    init_matrix<null_function>(C_stl,_size);
45c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    init_matrix<null_function>(resu_stl,_size);
46c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
47c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    // generic matrix and vector initialization
48c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    Interface::matrix_from_stl(X_ref,X_stl);
49c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    Interface::matrix_from_stl(X,X_stl);
50c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    Interface::matrix_from_stl(C,C_stl);
51c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
52c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    _cost = 0;
53c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    for (int j=0; j<_size-2; ++j)
54c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    {
55c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath      double r = std::max(0,_size-j-1);
56c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath      double b = std::max(0,_size-j-2);
57c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath      _cost += 6 + 3*b + r*r*4 + r*_size*4;
58c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    }
59c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  }
60c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
61c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  // invalidate copy ctor
62c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
63c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  Action_hessenberg( const  Action_hessenberg & )
64c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  {
65c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    INFOS("illegal call to Action_hessenberg Copy Ctor");
66c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    exit(1);
67c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  }
68c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
69c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  // Dtor
70c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
71c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  ~Action_hessenberg( void ){
72c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
73c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    MESSAGE("Action_hessenberg Dtor");
74c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
75c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    // deallocation
76c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    Interface::free_matrix(X_ref,_size);
77c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    Interface::free_matrix(X,_size);
78c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    Interface::free_matrix(C,_size);
79c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  }
80c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
81c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  // action name
82c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
83c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  static inline std::string name( void )
84c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  {
85c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    return "hessenberg_"+Interface::name();
86c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  }
87c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
88c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  double nb_op_base( void ){
89c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    return _cost;
90c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  }
91c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
92c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  inline void initialize( void ){
93c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    Interface::copy_matrix(X_ref,X,_size);
94c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  }
95c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
96c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  inline void calculate( void ) {
97c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath      Interface::hessenberg(X,C,_size);
98c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  }
99c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
100c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  void check_result( void ){
101c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    // calculation check
102c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    Interface::matrix_to_stl(C,resu_stl);
103c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
104c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath//     STL_interface<typename Interface::real_type>::hessenberg(X_stl,C_stl,_size);
105c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath//
106c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath//     typename Interface::real_type error=
107c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath//       STL_interface<typename Interface::real_type>::norm_diff(C_stl,resu_stl);
108c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath//
109c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath//     if (error>1.e-6){
110c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath//       INFOS("WRONG CALCULATION...residual=" << error);
111c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath//       exit(0);
112c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath//     }
113c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
114c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  }
115c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
116c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamathprivate :
117c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
118c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  typename Interface::stl_matrix X_stl;
119c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  typename Interface::stl_matrix C_stl;
120c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  typename Interface::stl_matrix resu_stl;
121c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
122c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  typename Interface::gene_matrix X_ref;
123c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  typename Interface::gene_matrix X;
124c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  typename Interface::gene_matrix C;
125c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
126c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  int _size;
127c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  double _cost;
128c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath};
129c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
130c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamathtemplate<class Interface>
131c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamathclass Action_tridiagonalization {
132c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
133c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamathpublic :
134c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
135c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  // Ctor
136c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
137c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  Action_tridiagonalization( int size ):_size(size)
138c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  {
139c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    MESSAGE("Action_tridiagonalization Ctor");
140c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
141c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    // STL vector initialization
142c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    init_matrix<pseudo_random>(X_stl,_size);
143c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
144c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    for(int i=0; i<_size; ++i)
145c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    {
146c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath      for(int j=0; j<i; ++j)
147c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath        X_stl[i][j] = X_stl[j][i];
148c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    }
149c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
150c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    init_matrix<null_function>(C_stl,_size);
151c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    init_matrix<null_function>(resu_stl,_size);
152c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
153c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    // generic matrix and vector initialization
154c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    Interface::matrix_from_stl(X_ref,X_stl);
155c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    Interface::matrix_from_stl(X,X_stl);
156c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    Interface::matrix_from_stl(C,C_stl);
157c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
158c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    _cost = 0;
159c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    for (int j=0; j<_size-2; ++j)
160c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    {
161c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath      double r = std::max(0,_size-j-1);
162c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath      double b = std::max(0,_size-j-2);
163c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath      _cost += 6. + 3.*b + r*r*8.;
164c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    }
165c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  }
166c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
167c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  // invalidate copy ctor
168c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
169c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  Action_tridiagonalization( const  Action_tridiagonalization & )
170c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  {
171c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    INFOS("illegal call to Action_tridiagonalization Copy Ctor");
172c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    exit(1);
173c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  }
174c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
175c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  // Dtor
176c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
177c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  ~Action_tridiagonalization( void ){
178c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
179c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    MESSAGE("Action_tridiagonalization Dtor");
180c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
181c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    // deallocation
182c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    Interface::free_matrix(X_ref,_size);
183c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    Interface::free_matrix(X,_size);
184c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    Interface::free_matrix(C,_size);
185c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  }
186c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
187c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  // action name
188c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
189c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  static inline std::string name( void ) { return "tridiagonalization_"+Interface::name(); }
190c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
191c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  double nb_op_base( void ){
192c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    return _cost;
193c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  }
194c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
195c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  inline void initialize( void ){
196c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    Interface::copy_matrix(X_ref,X,_size);
197c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  }
198c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
199c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  inline void calculate( void ) {
200c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath      Interface::tridiagonalization(X,C,_size);
201c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  }
202c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
203c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  void check_result( void ){
204c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    // calculation check
205c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath    Interface::matrix_to_stl(C,resu_stl);
206c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
207c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath//     STL_interface<typename Interface::real_type>::tridiagonalization(X_stl,C_stl,_size);
208c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath//
209c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath//     typename Interface::real_type error=
210c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath//       STL_interface<typename Interface::real_type>::norm_diff(C_stl,resu_stl);
211c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath//
212c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath//     if (error>1.e-6){
213c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath//       INFOS("WRONG CALCULATION...residual=" << error);
214c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath//       exit(0);
215c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath//     }
216c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
217c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  }
218c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
219c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamathprivate :
220c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
221c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  typename Interface::stl_matrix X_stl;
222c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  typename Interface::stl_matrix C_stl;
223c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  typename Interface::stl_matrix resu_stl;
224c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
225c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  typename Interface::gene_matrix X_ref;
226c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  typename Interface::gene_matrix X;
227c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  typename Interface::gene_matrix C;
228c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
229c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  int _size;
230c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath  double _cost;
231c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath};
232c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath
233c981c48f5bc9aefeffc0bcb0cc3934c2fae179ddNarayan Kamath#endif
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