127fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk/*
227fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk * Copyright (C) 2012 The Android Open Source Project
327fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk *
427fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk * Licensed under the Apache License, Version 2.0 (the "License");
527fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk * you may not use this file except in compliance with the License.
627fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk * You may obtain a copy of the License at
727fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk *
827fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk *      http://www.apache.org/licenses/LICENSE-2.0
927fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk *
1027fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk * Unless required by applicable law or agreed to in writing, software
1127fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk * distributed under the License is distributed on an "AS IS" BASIS,
1227fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
1327fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk * See the License for the specific language governing permissions and
1427fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk * limitations under the License.
1527fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk */
1627fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
1727fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk#ifndef KMEANS_H
1827fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk#define KMEANS_H
1927fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
2027fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk#include <cstdlib>
2127fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk#include <math.h>
2227fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
2327fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk// Helper functions
2427fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
2527fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunktemplate <typename T, typename N>
2627fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunkinline void sum(T values[], int len, int dimension, int stride, N dst[]) {
2727fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    int x, y;
2827fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    // zero out dst vector
2927fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    for (x = 0; x < dimension; x++) {
3027fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        dst[x] = 0;
3127fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    }
3227fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    for (x = 0; x < len; x+= stride) {
3327fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        for (y = 0; y < dimension; y++) {
3427fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk            dst[y] += values[x + y];
3527fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        }
3627fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    }
3727fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk}
3827fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
3927fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunktemplate <typename T, typename N>
4027fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunkinline void set(T val1[], N val2[], int dimension) {
4127fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    int x;
4227fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    for (x = 0; x < dimension; x++) {
4327fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        val1[x] = val2[x];
4427fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    }
4527fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk}
4627fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
4727fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunktemplate <typename T, typename N>
4827fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunkinline void add(T val[], N dst[], int dimension) {
4927fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    int x;
5027fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    for (x = 0; x < dimension; x++) {
5127fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        dst[x] += val[x];
5227fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    }
5327fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk}
5427fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
5527fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunktemplate <typename T, typename N>
5627fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunkinline void divide(T dst[], N divisor, int dimension) {
5727fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk   int x;
5827fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk   if (divisor == 0) {
5927fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk       return;
6027fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk   }
6127fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk   for (x = 0; x < dimension; x++) {
6227fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk       dst[x] /= divisor;
6327fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk   }
6427fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk}
6527fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
6627fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk/**
6727fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk * Calculates euclidean distance.
6827fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk */
6927fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
7027fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunktemplate <typename T, typename N>
7127fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunkinline N euclideanDist(T val1[], T val2[], int dimension) {
7227fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    int x;
7327fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    N sum = 0;
7427fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    for (x = 0; x < dimension; x++) {
7527fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        N diff = (N) val1[x] - (N) val2[x];
7627fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        sum += diff * diff;
7727fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    }
7827fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    return sqrt(sum);
7927fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk}
8027fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
8127fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk// K-Means
8227fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
8327fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
8427fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk/**
8527fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk * Picks k random starting points from the data set.
8627fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk */
8727fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunktemplate <typename T>
88f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunkvoid initialPickHeuristicRandom(int k, T values[], int len, int dimension, int stride, T dst[],
89f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk        unsigned int seed) {
9027fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    int x, z, num_vals, cntr;
9127fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    num_vals = len / stride;
9227fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    cntr = 0;
93f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk    srand(seed);
9427fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    unsigned int r_vals[k];
9527fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    unsigned int r;
9627fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
9727fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    for (x = 0; x < k; x++) {
9827fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
9927fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        // ensure randomly chosen value is unique
10027fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        int r_check = 0;
10127fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        while (r_check == 0) {
10227fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk            r = (unsigned int) rand() % num_vals;
10327fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk            r_check = 1;
10427fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk            for (z = 0; z < x; z++) {
10527fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk                if (r == r_vals[z]) {
10627fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk                    r_check = 0;
10727fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk                }
10827fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk            }
10927fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        }
11027fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        r_vals[x] = r;
11127fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        r *= stride;
11227fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
11327fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        // set dst to be randomly chosen value
11427fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        set<T,T>(dst + cntr, values + r, dimension);
11527fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        cntr += stride;
11627fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    }
11727fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk}
11827fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
11927fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk/**
12027fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk * Finds index of closet centroid to a value
12127fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk */
12227fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunktemplate <typename T, typename N>
12327fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunkinline int findClosest(T values[], T oldCenters[], int dimension, int stride, int pop_size) {
12427fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    int best_ind = 0;
12527fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    N best_len = euclideanDist <T, N>(values, oldCenters, dimension);
12627fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    int y;
12727fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    for (y = stride; y < pop_size; y+=stride) {
12827fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        N l = euclideanDist <T, N>(values, oldCenters + y, dimension);
12927fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        if (l < best_len) {
13027fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk            best_len = l;
13127fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk            best_ind = y;
13227fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        }
13327fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    }
13427fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    return best_ind;
13527fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk}
13627fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
13727fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk/**
13827fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk * Calculates new centroids by averaging value clusters for old centroids.
13927fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk */
14027fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunktemplate <typename T, typename N>
14127fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunkint calculateNewCentroids(int k, T values[], int len, int dimension, int stride, T oldCenters[],
14227fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        T dst[]) {
14327fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    int x, pop_size;
14427fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    pop_size = k * stride;
14527fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    int popularities[k];
14627fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    N tmp[pop_size];
14727fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
14827fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    //zero popularities
14927fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    memset(popularities, 0, sizeof(int) * k);
15027fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    // zero dst, and tmp
15127fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    for (x = 0; x < pop_size; x++) {
15227fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        tmp[x] = 0;
15327fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    }
15427fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
15527fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    // put summation for each k in tmp
15627fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    for (x = 0; x < len; x+=stride) {
15727fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        int best = findClosest<T, N>(values + x, oldCenters, dimension, stride, pop_size);
15827fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        add<T, N>(values + x, tmp + best, dimension);
15927fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        popularities[best / stride]++;
16027fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
16127fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    }
16227fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
16327fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    int ret = 0;
16427fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    int y;
16527fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    // divide to get centroid and set dst to result
16627fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    for (x = 0; x < pop_size; x+=stride) {
16727fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        divide<N, int>(tmp + x, popularities[x / stride], dimension);
16827fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        for (y = 0; y < dimension; y++) {
16927fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk            if ((dst + x)[y] != (T) ((tmp + x)[y])) {
17027fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk                ret = 1;
17127fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk            }
17227fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        }
17327fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        set(dst + x, tmp + x, dimension);
17427fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    }
17527fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    return ret;
17627fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk}
17727fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
178f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunktemplate <typename T, typename N>
179f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunkvoid runKMeansWithPicks(int k, T finalCentroids[], T values[], int len, int dimension, int stride,
180f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk        int iterations, T initialPicks[]){
181f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk        int k_len = k * stride;
182f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk        int x;
183f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk
184f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk        // zero newCenters
185f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk        for (x = 0; x < k_len; x++) {
186f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk            finalCentroids[x] = 0;
187f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk        }
188f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk
189f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk        T * c1 = initialPicks;
190f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk        T * c2 = finalCentroids;
191f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk        T * temp;
192f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk        int ret = 1;
193f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk        for (x = 0; x < iterations; x++) {
194f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk            ret = calculateNewCentroids<T, N>(k, values, len, dimension, stride, c1, c2);
195f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk            temp = c1;
196f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk            c1 = c2;
197f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk            c2 = temp;
198f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk            if (ret == 0) {
199f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk                x = iterations;
200f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk            }
201f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk        }
202f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk        set<T, T>(finalCentroids, c1, dimension);
203f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk}
204f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk
20527fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk/**
20627fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk * Runs the k-means algorithm on dataset values with some initial centroids.
20727fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk */
20827fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunktemplate <typename T, typename N>
20927fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunkvoid runKMeans(int k, T finalCentroids[], T values[], int len, int dimension, int stride,
210f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk        int iterations, unsigned int seed){
21127fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    int k_len = k * stride;
21227fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    T initialPicks [k_len];
213f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk    initialPickHeuristicRandom<T>(k, values, len, dimension, stride, initialPicks, seed);
21427fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
215f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk    runKMeansWithPicks<T, N>(k, finalCentroids, values, len, dimension, stride,
216f83b26c24ad2e3f6c9468afe18f43d1b53162fe3Ruben Brunk        iterations, initialPicks);
21727fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk}
21827fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
21927fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk/**
22027fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk * Sets each value in values to the closest centroid.
22127fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk */
22227fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunktemplate <typename T, typename N>
22327fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunkvoid applyCentroids(int k, T centroids[], T values[], int len, int dimension, int stride) {
22427fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    int x, pop_size;
22527fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    pop_size = k * stride;
22627fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    for (x = 0; x < len; x+= stride) {
22727fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        int best = findClosest<T, N>(values + x, centroids, dimension, stride, pop_size);
22827fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk        set<T, T>(values + x, centroids + best, dimension);
22927fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk    }
23027fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk}
23127fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk
23227fb72ee1413871b4958ab2f24a229574de6ffa2Ruben Brunk#endif // KMEANS_H
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